Index

A

Admin (class in Src.Model.admin) admin_schema (in module Src.Schema.admin) AdminSchema (class in Src.Schema.admin) AdminSchema.Meta (class in Src.Schema.admin) alert_admin_failure() (in module Src.SMTP.smtp) Amt (class in Src.Model.amt) amt_delete_by_filter() (in module Src.Service.delete) amt_delete_by_id() (in module Src.Service.delete) amt_query_all() (in module Src.Service.search) amt_schema (in module Src.Schema.amt)

amt_search_by_fields_ret_all() (in module Src.Service.search) amt_search_by_fields_ret_one() (in module Src.Service.search) amt_search_by_id() (in module Src.Service.search) amt_unmapped_search() (in module Src.Service.search) amts_schema (in module Src.Schema.amt) AMTSchema (class in Src.Schema.amt) AMTSchema.Meta (class in Src.Schema.amt) ARTG_ID (Src.Model.amt.Amt attribute) AU_Substance_SCTID (Src.Model.amt.Snomed attribute) auth (in module Src.Handler.auth)

B

bcrypt (in module Src.Auth.auth)

bootstrap_admin() (in module Src.Utils.bootstrap_admin) build_snomed_table_from_dict() (in module Src.Service.snomed_import)

C

check_admin_arg() (in module Src.Utils.app_args) check_debug_arg() (in module Src.Utils.app_args) create (in module Src.Handler.create) create_admin() (in module Src.Service.admin) create_amt() (in module Src.Service.create)

create_app() (in module Src.app) create_snomed() (in module Src.Service.create) create_version() (in module Src.Service.version) CTPP_PT (Src.Model.amt.Amt attribute) CTPP_SCTID (Src.Model.amt.Amt attribute)

D

date (Src.Model.version.Version attribute) db (in module Src.Database.database) delete (in module Src.Handler.delete) delete_admin() (in module Src.Service.admin) delete_amt_by_filter() (in module Src.Handler.delete)

delete_amt_by_id() (in module Src.Handler.delete) delete_amt_table() (in module Src.Service.amt_rebuild) delete_csv_dist_collection() (in module Src.Utils.lib) delete_snomed_by_filter() (in module Src.Handler.delete) delete_snomed_by_key() (in module Src.Handler.delete) delete_versions() (in module Src.Service.version)

E

email (Src.Model.admin.Admin attribute)

export (in module Src.Handler.export)

F

file (Src.Model.version.Version attribute)

G

get_admin_email() (in module Src.Service.admin) get_admin_user() (in module Src.Service.admin) get_admin_user_by_username() (in module Src.Service.admin) get_amt_search() (in module Src.Handler.search) get_amt_search_id() (in module Src.Handler.search) get_auth_token() (in module Src.Requests.post_ncts_auth)

get_distro_csv() (in module Src.Requests.get_distro_csv) get_distro_meta() (in module Src.Requests.get_distro_meta) get_export() (in module Src.Handler.export) get_snomed_search() (in module Src.Handler.search) get_snomed_search_key() (in module Src.Handler.search) get_unmapped_amt() (in module Src.Handler.search) get_version() (in module Src.Service.version)

I

id (Src.Model.admin.Admin attribute) ID (Src.Model.amt.Amt attribute) id (Src.Model.version.Version attribute) import_snomed_csv() (in module Src.Utils.startup_tasks)

importer_task() (in module Src.ScheduledTask.task) initalize_db() (in module Src.Database.database) Int_Substance_SCTID (Src.Model.amt.Snomed attribute) is_outdated_versions() (in module Src.Utils.lib)

J

jwt (in module Src.Auth.auth)

L

link (Src.Model.version.Version attribute) load_instance (Src.Schema.admin.AdminSchema.Meta attribute) (Src.Schema.amt.AMTSchema.Meta attribute) (Src.Schema.snomed.SnomedSchema.Meta attribute) (Src.Schema.version.VersionSchema.Meta attribute)

log() (in module Src.Utils.app_logging)

M

ma (in module Src.Database.database) mail (in module Src.SMTP.smtp) metadata (Src.Model.amt.Amt attribute) (Src.Model.amt.Snomed attribute) model (Src.Schema.admin.AdminSchema.Meta attribute) (Src.Schema.amt.AMTSchema.Meta attribute) (Src.Schema.snomed.SnomedSchema.Meta attribute) (Src.Schema.version.VersionSchema.Meta attribute) module Src.app Src.Auth.auth Src.Database.database Src.Handler.auth Src.Handler.create Src.Handler.delete Src.Handler.export Src.Handler.search Src.Handler.update Src.Model.admin Src.Model.amt Src.Model.version Src.Requests.get_distro_csv Src.Requests.get_distro_meta Src.Requests.post_ncts_auth Src.ScheduledTask.scheduler Src.ScheduledTask.task Src.Schema.admin Src.Schema.amt Src.Schema.snomed Src.Schema.version Src.Service.admin Src.Service.amt_rebuild Src.Service.create Src.Service.delete Src.Service.search Src.Service.snomed_import Src.Service.update Src.Service.version Src.SMTP.smtp Src.Utils.app_args Src.Utils.app_logging Src.Utils.bootstrap_admin Src.Utils.constants Src.Utils.http Src.Utils.lib Src.Utils.startup_tasks

MP_PT (Src.Model.amt.Amt attribute) (Src.Model.amt.Snomed attribute) MP_SCTID (Src.Model.amt.Amt attribute) MPP_PT (Src.Model.amt.Amt attribute) MPP_SCTID (Src.Model.amt.Amt attribute) MPUU_PT (Src.Model.amt.Amt attribute) MPUU_SCTID (Src.Model.amt.Amt attribute)

O

opts (Src.Schema.admin.AdminSchema attribute) (Src.Schema.amt.AMTSchema attribute) (Src.Schema.snomed.SnomedSchema attribute) (Src.Schema.version.VersionSchema attribute)

P

password (Src.Model.admin.Admin attribute) post_amt_create() (in module Src.Handler.create) post_auth() (in module Src.Handler.auth) post_snomed_create() (in module Src.Handler.create)

prod_logging() (in module Src.Utils.app_logging) put_update_AU_Substance_SCTID_by_filters() (in module Src.Handler.update) put_update_AU_Substance_SCTID_by_id() (in module Src.Handler.update) put_update_Int_Substance_SCTID_by_filters() (in module Src.Handler.update) put_update_Int_Substance_SCTID_by_id() (in module Src.Handler.update)

Q

query (Src.Model.admin.Admin attribute) (Src.Model.amt.Amt attribute) (Src.Model.version.Version attribute)

R

rebuild_table_from_dict() (in module Src.Service.amt_rebuild) reset_jwt() (in module Src.Auth.auth)

response_to_csv() (in module Src.Utils.http) retrieve_export_csv() (in module Src.Utils.lib)

S

scheduler (in module Src.ScheduledTask.scheduler) scheduler_init_app() (in module Src.ScheduledTask.scheduler) search (in module Src.Handler.search) setup_data_dir() (in module Src.Utils.lib) Snomed (class in Src.Model.amt) (Src.Model.amt.Amt attribute) snomed (Src.Model.amt.Amt attribute) snomed_delete_by_filter() (in module Src.Service.delete) snomed_delete_by_id() (in module Src.Service.delete) snomed_query_all() (in module Src.Service.search) snomed_record_count() (in module Src.Service.snomed_import) snomed_schema (in module Src.Schema.snomed) snomed_search_by_fields_ret_all() (in module Src.Service.search) snomed_search_by_fields_ret_one() (in module Src.Service.search) snomed_search_by_id() (in module Src.Service.search) snomeds_schema (in module Src.Schema.snomed) SnomedSchema (class in Src.Schema.snomed) SnomedSchema.Meta (class in Src.Schema.snomed) sqla_session (Src.Schema.admin.AdminSchema.Meta attribute) (Src.Schema.amt.AMTSchema.Meta attribute) (Src.Schema.snomed.SnomedSchema.Meta attribute) (Src.Schema.version.VersionSchema.Meta attribute) Src.app module Src.Auth.auth module Src.Database.database module Src.Handler.auth module Src.Handler.create module Src.Handler.delete module Src.Handler.export module Src.Handler.search module Src.Handler.update module Src.Model.admin module Src.Model.amt module Src.Model.version module Src.Requests.get_distro_csv module

Src.Requests.get_distro_meta module Src.Requests.post_ncts_auth module Src.ScheduledTask.scheduler module Src.ScheduledTask.task module Src.Schema.admin module Src.Schema.amt module Src.Schema.snomed module Src.Schema.version module Src.Service.admin module Src.Service.amt_rebuild module Src.Service.create module Src.Service.delete module Src.Service.search module Src.Service.snomed_import module Src.Service.update module Src.Service.version module Src.SMTP.smtp module Src.Utils.app_args module Src.Utils.app_logging module Src.Utils.bootstrap_admin module Src.Utils.constants module Src.Utils.http module Src.Utils.lib module Src.Utils.startup_tasks module

T

TPP_PT (Src.Model.amt.Amt attribute) TPP_SCTID (Src.Model.amt.Amt attribute) TPP_TP_PT (Src.Model.amt.Amt attribute) TPP_TP_SCTID (Src.Model.amt.Amt attribute)

TPUU_PT (Src.Model.amt.Amt attribute) TPUU_SCTID (Src.Model.amt.Amt attribute) TPUU_TP_PT (Src.Model.amt.Amt attribute) TPUU_TP_SCTID (Src.Model.amt.Amt attribute)

U

update (in module Src.Handler.update) update_AU_Substance_SCTID_by_filters() (in module Src.Service.update) update_AU_Substance_SCTID_by_id() (in module Src.Service.update)

update_Int_Substance_SCTID_by_filters() (in module Src.Service.update) update_Int_Substance_SCTID_by_id() (in module Src.Service.update) username (Src.Model.admin.Admin attribute)

V

Version (class in Src.Model.version) version_schema (in module Src.Schema.version)

VersionSchema (class in Src.Schema.version) VersionSchema.Meta (class in Src.Schema.version)

X

xml_response_to_version() (in module Src.Utils.http)